It unknown what exactly became of Joe, although he did not escape Sevastopol and would have died when the station burned up in the atmosphere of KG-348, if he was not killed earlier.
During the Xenomorph incident, Joe joined forces with a group of survivors, who were eventually killed by unknown means as a result of allowing another survivor into their group. Joe moved on and eventually joined forces with another group.
While heading for Seegson Communications, Amanda and Axel encountered Joe and his group. The two sneaked past the group by shutting off the floodlights in the room, before sneaking past the others while they were distracted. After getting past Joe and the others, they wandered through several hallways until they found themselves trapped by a two-man lock system, designed by Joe himself.
After unlocking the door to get through, they were ambushed by another member of Joe's group who was waiting on the other side. The survivor attacked Axel, and during the scuffle Amanda sneaked up on the survivor and struck him with her maintenance jack, stunning the survivor long enough for Axel to recover and shoot him dead.
Seconds later, Joe and the others appeared. Enraged at the murder of their teammate, they pursued Axel and Amanda briefly until the two moved through a doorway, locking the door behind them.
Joe's fate afterward is unknown, although it is highly unlikely he escaped Sevastopol before it burned up in KG-348's atmosphere.